|
ORF ID |
KEGG ID |
Gene name |
Definition |
KO |
EC number |
Comment |
Category |
Position |
Start position |
Length |
Last update |
Last annotator |
Reference |
|
sll1457 |
syn:sll1457 |
rfbJ |
RfbJ protein |
|
|
|
|
complement(996850..997806) |
996850 |
318 |
2001-12-28 18:41:30 |
system |
|
|
sll1456 |
syn:sll1456 |
|
hypothetical protein |
|
|
|
|
complement(998010..998918) |
998010 |
302 |
2001-12-28 18:41:31 |
system |
|
|
slr1552 |
syn:slr1552 |
|
hypothetical protein |
|
|
|
|
999029..1001563 |
999029 |
844 |
2001-12-28 18:41:31 |
system |
|
|
sll1455 |
syn:sll1455 |
narM |
Nitrate reductase-related protein |
|
|
|
|
complement(1001639..1002106) |
1001639 |
155 |
2006-10-13 11:52:36 |
Omata, Tatsuo |
|
|
ssr2615 |
syn:ssr2615 |
|
|
|
|
|
|
1002141..1002368 |
1002141 |
75 |
2002-02-13 14:50:50 |
system |
|
|
smr0013 |
syn:smr0013 |
|
|
|
|
|
|
1002441..1002617 |
1002441 |
58 |
2002-02-13 14:50:50 |
system |
|
|
sll1454 |
syn:sll1454 |
narB |
ferredoxin--nitrate reductase |
K00367 |
1.7.7.2 |
|
Nitrogen metabolism |
complement(1002633..1004777) |
1002633 |
714 |
2006-07-11 17:23:41 |
Omata, Tatsuo |
1.Aichi M, Takatani N, Omata T (2001) Role of NtcB in activation of nitrate assimilation genes in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 183:5840-7. [PMID:11566981]
|
|
ssl2814 |
syn:ssl2814 |
|
|
|
|
|
|
complement(1004822..1005091) |
1004822 |
89 |
2002-02-13 14:50:50 |
system |
|
|
sll1453 |
syn:sll1453 |
nrtD |
ABC-type nitrate/nitrite transport system ATP-binding protein |
K02049 |
|
|
ABC transporters |
complement(1005181..1006179) |
1005181 |
332 |
2007-02-08 16:14:26 |
Taton, Arnaud |
1.Aichi M, Takatani N, Omata T (2001) Role of NtcB in activation of nitrate assimilation genes in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 183:5840-7. [PMID:11566981] 2.Koropatkin NM, Pakrasi HB, Smith TJ (2006) Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity. Proc Natl Acad Sci U S A 103:9820-5. [PMID:16777960]
|
|
sll1452 |
syn:sll1452 |
nrtC |
ABC-type nitrate/nitrite transport system ATP-binding protein |
K02049 |
|
Amino acids 281-670 of this protein comprise a distinct domain, which is 30% identical to NrtA. As in Synechococcus sp. strain PCC s7942, the C-terminal domain of NrtC has been shown to be involved in ammonium-promoted inhibition of nitrate/nitrite transport (T. Omata) ; Synergistic regulation of bicarbonate and nitrate transport, suggested by Koropatkin et al. (2006). |
ABC transporters |
complement(1006234..1008246) |
1006234 |
670 |
2007-06-22 23:13:17 |
Taton, Arnaud |
1.Aichi M, Takatani N, Omata T (2001) Role of NtcB in activation of nitrate assimilation genes in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 183:5840-7. [PMID:11566981] 2.Kobayashi M, Takatani N, Tanigawa M, Omata T (2005) Posttranslational Regulation of Nitrate Assimilation in the Cyanobacterium Synechocystis sp. Strain PCC 6803. J Bacteriol 187:498-506. [PMID:15629921] 3.Koropatkin NM, Pakrasi HB, Smith TJ (2006) Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity. Proc Natl Acad Sci U S A 103:9820-5. [PMID:16777960]
|
|
sll1451 |
syn:sll1451 |
nrtB |
ABC-type nitrate/nitrite transport system permease protein |
K02050 |
|
FUNCTIONs - PHYSIOLOGICAL-ROLE: Active transport of nitrate s - PROTEIN-FUNCTION: permease protein 'DED: similarity with Synechococcus ssp. PCC 7942 'REF: Aichi et al. 2001sPROTEIN-FAMILY: Super-family of ABC transporters sLOCALIZATION/STRUCTURE: -sREGULATIONs - OPERON-STRUCTURE: nrtABCD-narB (nrtABCD-?ssl2814?-narB in CYORF) `EXP: sNorthern hybridization nrtC-specific probe indicated the presence of a slarge transcription unit / narB-specific probe yielded essentially the same shybridization profile / the size of the largest signal was close to the scalculated size of the nrt-ABCD-narB gene cluster. `REF: Aichi et al. 2001s - REGULATOR: NtcA binding site, 20 bp upstream from the -10 promoter selement of nrtA `EXP `REF: Aichi et al. 2001s - PROMOTER: promoter contained an inverted repeat carrying a LysR motif s(TN11A), centered at position -24 with respect to the NtcA-binding motif ssupposed to constitute the binding site for NtcB `REF: Aichi et al. 2001s - EXPRESSION: The expression of nrtABCD-narB is repressed by ammonium and sinduced by inhibition of ammonium assimilation, suggesting involvement of sNtcA. / Under inducing conditions, expression of the transcription unit is senhanced by nitrite, suggesting regulation by NtcB. `REF: Aichi et al. 2001sMUTANTS: -sOTHER COMMENTS: `HYP: synergistic regulation of bicarbonate and nitrate stransport `REF: Koropatkin et al. 2006 |
ABC transporters |
complement(1008321..1009148) |
1008321 |
275 |
2006-09-26 20:14:43 |
Taton, Arnaud |
1.Aichi M, Takatani N, Omata T (2001) Role of NtcB in activation of nitrate assimilation genes in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 183:5840-7. [PMID:11566981]
|